PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016476526.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 179aa    MW: 20958.4 Da    PI: 10.8926
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016476526.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.62.3e-1363157185
                     EEEE-..-HHHHT.T-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
              B3   1 ffkvltpsdvlks.grlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                     f+k+lt+sdv ++ grl l ++ +++          g++ + ++++t  d+  +s++++++ +++ ++yvl + W++Fvk+++Lke+D v+  + 
  XP_016476526.1  63 FEKQLTKSDVDEHqGRLLLNNEDVRSKllpllngknGENLAHGVKVTTFDQLCNSYKMNFKTWGNYRSYVLLGSWRQFVKDHKLKENDHVTVWMF 157
                     99**********9899********999*****987755556777788777777999999999**************************9985533 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.63E-1863167IPR015300DNA-binding pseudobarrel domain
SMARTSM010199.7E-563169IPR003340B3 DNA binding domain
PfamPF023621.1E-963163IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-1663165IPR015300DNA-binding pseudobarrel domain
CDDcd100179.61E-1463169No hitNo description
PROSITE profilePS508638.797117173IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MSKIWPPFFM SKESRKLQKS KRKISKPIPK KIRISPSTLT NLPKLPPVQN LRGIIGTICS  60
DPFEKQLTKS DVDEHQGRLL LNNEDVRSKL LPLLNGKNGE NLAHGVKVTT FDQLCNSYKM  120
NFKTWGNYRS YVLLGSWRQF VKDHKLKEND HVTVWMFRHN QTNSLCFAIT WKRNFSKDR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009763569.11e-131PREDICTED: putative B3 domain-containing protein At4g03170
RefseqXP_016476526.11e-131PREDICTED: putative B3 domain-containing protein At4g03170
TrEMBLA0A0V0HBX26e-59A0A0V0HBX2_SOLCH; Putative ovule protein
TrEMBLM0ZHP67e-59M0ZHP6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000009912e-58(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64301214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.14e-25B3 family protein